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Rich Chocolate Sourdough Zucchini Muffins are this chocolate lover’s new favorite muffin! Filled with shredded zucchini – no wringing out required for this recipe – and sourdough discard, these muffins are moist and delicious, just like my chocolate sourdough cupcakes and sourdough zucchini cake. My kids can’t get enough of them and I’m happy to use up my summer zucchini in such a yummy way. Win win!

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Why You’ll Love Chocolate Sourdough Zucchini Muffins
- Moist and tender: The zucchini in these muffins give them the most perfect texture, just like my Double Chocolate Sourdough Muffins!
- Full of zucchini: You’ll love how these muffins have so much healthy zucchini in them, but they taste like chocolate—delicious flavor with healthy veggie balance. Or try my Spinach Sourdough Banana Muffins for another veggie-packed option!
- Easy: These chocolate sourdough zucchini muffins are quick and easy to whip together – just like my Sourdough Zucchini Muffins, they only take a few minutes to whisk together.
Important Ingredients
- Sourdough Discard – These muffins use about 1/2 cup or 100 grams of sourdough discard. I use discard where the starter has been fed equal weights of flour and water (100% hydration). The older the discard, the more sour tang will be prevalent in these muffins. If you don’t want any sour flavor, use a fresher discard.
- Unsalted Butter – I always use unsalted butter in baking because I can control the salt content in my recipe. These muffins use melted unsalted butter in the batter.
- Vegetable Oil – The combination of butter and oil adds flavor and incredible texture to these muffins.
- Sugar – White granulated sugar provides the sweetness in these muffins.
- Egg – One large egg brings richness, a good texture, and helps muffins rise.
- Milk – 2% or whole milk works best.
- Vanilla Extract – Vanilla extract enhances the sweet flavor of these muffins.
- All-purpose flour – I use all-purpose flour or a pastry flour with a lower protein content in these muffins.
- Cocoa Powder – I like using a good quality dutched cocoa powder.
- Baking Soda & Powder – A combination of these two make these muffins rise.
- Salt – Salt is important in balancing the flavors.
- Zucchini – Zucchini keeps these muffins moist and tender. You don’t need to squeeze and drain the zucchini for this recipe, but you can if you want to. The zucchini does need to be shredded.
- Chocolate Chips – Add chocolate chips for some extra chocolaty flavor.
How to Make Chocolate Sourdough Zucchini Muffins
Prepare Batter
Begin preparing the batter for these chocolate zucchini muffins by combining the wet ingredients in a small bowl. Add sourdough discard, melted butter, vegetable oil and sugar. Be careful that your melted butter isn’t too hot. Whisk together until combined. Add the egg, milk and vanilla extract and whisk again until smooth. Set aside.
Next, combine the dry ingredients in a large bowl. Add the flour, cocoa powder, baking powder, baking soda, and salt. Whisk together to combined. Set aside.

Add Zucchini and Mix
Prepare your zucchini by washing and chopping off the ends. Use a box grater to shred the zucchini on the fine setting. You want your zucchini to be finely shredded. For this recipe, you don’t need to drain the excess water from the zucchini before using it.
Pour the liquid ingredients on top of the dry ingredients. Gently stir until partially combined. Add the shredded zucchini and chocolate chunks. Stir until just combined. It’s okay if there are a few dry streaks in your sourdough discard zucchini muffin batter.

Bake the Muffins
Prepare your muffin tins by placing parchment liners or muffin liners into a 12 cup muffin tin. I really love these USA Bakeware muffin tins. You can also spray the muffin pan with baking spray if you don’t have or don’t want to use liners.
Scoop about 1/3 cup of batter evenly into parchment-lined muffin tins. You will end up with about 12 muffins.
Bake for 5 minutes at 425ºF. After 5 minutes reduce the temperature to 350ºF. Bake for 12-15 minutes. Check to see if your chocolate zucchini sourdough muffins are ready by inserting a toothpick into the center of the muffins. If it comes out clean with no streaks of batter, they are ready. You may see streaks of chocolate – that’s okay. If it has streaks of wet batter, continue baking and check again after a few minutes.
Let muffins cool for about 5 minutes in the pan and then remove to a cooling rack.

Amy’s Recipe Tip
Use the fine side of a cheese grater to grate the zucchini into really fine shreds. This makes the zucchini melt into the muffin giving the moisture without actually seeing any green strings of zucchini (my kids are averse to that!).
Substitutions
- Sourdough Starter: Substitute ripe, bubbly active sourdough starter in place of the discard if you want.
- Vegetable Oil: Any neutral flavored oil can be substituted for the vegetable oil in the recipe, or use all butter.
- Semi-Sweet Chocolate: Replace with any favorite chocolate – milk, dark or even chocolate chunks work.

How to Store Leftovers
Leftover muffins can be stored in an air-tight container or ziplock bag on the counter for 24 hours and then frozen after that to preserve freshness. Pull out to thaw or warm up in the microwave before eating.
Frequently Asked Questions
This recipe is formulated so you don’t need to wring out the zucchini. The extra water/moisture from the zucchini is needed for super moist muffins.
No, you don’t have to. Spray a muffin tin with baking spray before adding your muffin batter to the pan. If you don’t have liners but you do have parchment paper, make simple liners out of the parchment paper by cutting them into squares and placing them over the muffin cup. Add a scoop of batter on top of the parchment and you will have bakery-style muffins in homemade parchment liners.
Yes. To make mini muffins bake muffins at 425ºF for 5 minutes. Then reduce the temperature to 350ºF and bake for about 8 more minutes until baked all the way through.
Yes! You can use room temperature or cold sourdough discard, whichever you prefer.
Sourdough Muffin Recipes
If you tried these Chocolate Sourdough Zucchini Muffins or any other recipe on my website leave a 🌟 star rating and let me know how it went in the comments below. Happy Baking!

Chocolate Sourdough Zucchini Muffins
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Equipment
Ingredients
- 100 grams sourdough discard, scant 1/2 cup
- 40 grams unsalted butter, melted, about 3 Tablespoons
- 40 grams vegetable oil, about 3 Tablespoons
- 200 grams granulated sugar, about 1 cup
- 1 large egg, 50 grams
- 80 grams milk, about 1/3 cup
- 8 grams vanilla extract, about 2 teaspoons
- 125 grams all-purpose flour, about 1 cup
- 40 grams cocoa powder, about 1/2 cup
- 5 grams baking powder, 1 teaspoon
- 5 grams baking soda, 1 teaspoon
- 3 grams salt, 1/2 teaspoon salt
- 200 grams zucchini, finely shredded, about 1 1/2 cups
- 170 grams semi-sweet chocolate chips, about 1 cup
Instructions
- Preheat oven to 425ºF and prepare a 12 cup muffin tin with parchment liners or muffin liners. Alternatively you can spray the pan with baking spray if you have no liners.
- To a small bowl add sourdough discard, melted butter, vegetable oil and sugar. Whisk together until combined. Add the egg, milk and vanilla extract and whisk again until smooth. Set aside.
- To a large bowl, add the flour, cocoa powder, baking powder, baking soda, and salt. Whisk together to combined. Set aside.
- Wash zucchini and chop off the ends. Use a box grater to shred the zucchini on the fine setting. Pour the liquid ingredients on top of the dry ingredients. Gently stir until partially combined. Add the shredded zucchini and chocolate chunks. Stir until just combined – a few dry streaks are okay.
- Scoop about 1/3 cup of batter evenly into each muffin well. You will end up with about 12 muffins.
- Bake for 5 minutes at 425ºF. After 5 minutes reduce the temperature to 350ºF. Bake for 12-15 minutes. Insert a toothpick into the center of the muffins to check if they are ready. If it comes out clean with no streaks of batter, they are ready. You may see streaks of chocolate – that's okay. If it has streaks of wet batter, bake it a little longer and check again.
- Let muffins cool for about 5 minutes in the pan and then remove to a cooling rack. Enjoy!
Notes
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.




Ahh-Mazing!! These muffins are so light and fluffy, they turned out perfectly. I cut the sugar in half and added a little bit of maple syrup for a less sweet muffin and that worked out well. I also did half the amount of choco chips – again, trying to cut the sugar a little. These will certainly be going into my “bake again” recipe book!
I’m glad they were a big success! Thanks for the review.
Another spot-on recipe! Tripled with ease and made exactly 36 beautiful, glossy muffins. My husband says, “mmmmsooogood,” or at least I think that’s what he said with his mouth full. 😉
Yum! Thanks for the review!
Thank you for the measurements in grams. It made baking these so easy. They were delicious and a great way to use up some sourdough starter.
Using grams is definitely the way to go for accurate measurements! Enjoy!