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I’ve been making these cinnamon sugar sourdough muffins for years. They are simple but delicious – packed full of sweet cinnamon and sugar and made with sourdough discard. My kids love helping dunk the tops of these muffins in melty butter and cinnamon sugar giving the perfect sweet crunch to the tops of these muffins. I know you’re going to love them.

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Table of Contents
Why You’ll Love Cinnamon Sugar Sourdough Muffins
You will love how simple and sweet these discard muffins are. While you can click here to see a version of these muffins without sourdough discard, making this a sourdough recipe gives these muffins a texture that is light and fluffy. I always love baking with sourdough discard because it adds moisture and flavor – just like in my sourdough discard English muffins! You will love the sweet cinnamon flavor and the crunchy cinnamon/sugar topping of these muffins.
Important Ingredients

- Sourdough Discard: Use 100% hydration sourdough discard in these muffins – starter that has been fed equal weights of flour and water. Discard that is younger and more fresh will not give as much (or ANY) sour flavor. For more sour flavor, use older discard. You can also substitute fresh, bubbly sourdough starter for the discard in this recipe.
- Unsalted Butter: I always use unsalted butter in baking because I can control the salt content in my recipe. These muffins use unsalted butter in the batter AND melted butted to dunk the muffin tops in before dunking in a cinnamon/sugar mixture.
- Granulated Sugar: White granulated sugar adds the sweetness to these muffins. You can decrease the sugar by about 50 grams if desired – but going too much further than that and it will negatively affect the flavor of the muffins.
- Eggs: Eggs add richness and structure to the muffins.
- All-purpose flour: I use all-purpose flour or a pastry flour with a lower protein content in these muffins.
- Cornstarch: A little cornstarch goes a long way in making these muffins light and tender.
- Milk: 2% or whole milk will add liquid content to the batter and help add structure to these muffins.
- Vanilla Extract: Vanilla extract enhances the sweet flavor of the muffins.
- Ground Cinnamon: Cinnamon is the over-arching flavor profile of these muffins, so we use a lot of it!
- Nutmeg: Nutmeg adds a little extra pop of flavor to the muffins.
- Baking Powder: Baking powder helps give these muffins their rise.
- Salt: Salt balances the flavors in this recipe. Don’t leave it out.
Substitutions
- All-purpose flour: Substitute freshly milled soft whole wheat flour or any pastry flour.
- Vanilla Extract: I love substituting maple extract for the vanilla extract in this recipe. It gives the most delicious subtle but rich flavor – perfect if you want to serve these in the fall.
- Mix-Ins: This recipe doesn’t call for any mix-ins, but it would be great with about 1 cup of dried fruit, chopped nuts or cinnamon chips.

How to Make Cinnamon Sugar Sourdough Muffins
Mix the Batter
Wet Ingredients: Mix together the liquid ingredients. Melt unsalted butter in a large liquid measuring cup or small bowl. Let cool if needed (butter should be warm room temperature). Add the sourdough discard and whisk to combine. Pour in the sugar and eggs. Whisk again until completely combined. Add the milk and vanilla and whisk until incorporated and smooth.
Dry Ingredients: To a separate mixing bowl, whisk together the all-purpose flour, cornstarch, baking powder, cinnamon, nutmeg and salt until all ingredients are fully incorporated.
Mixing Together: Pour the wet ingredients into the dry ingredients and mix with a spatula until just mixed – it’s okay if your batter has a few small streaks of flour. The key to a tender muffin is not over-mixing.



Bake the Muffins
Scoop muffin batter into the wells of a muffin tin that has been sprayed with non-stick cooking spray, filling the tins about 3/4 of the way full. This recipe makes about 12-14 muffins.
Bake at 350ºF for 20-22 minutes until muffins are baked all the way through. The tops of the muffins should not jiggle and if you insert a toothpick to the middle of the muffin it will come out clean.


Dunk Muffins in Butter/Cinnamon Sugar Mixture
While the muffins cool, prepare the topping. Melt butter in a bowl. In a separate small bowl, mix together sugar and cinnamon.
Once the muffins have cooled (they can still be slightly warm for this part), dip the top of each muffin into the butter and then dip into the cinnamon sugar mixture. Continue this process until every muffin in coated in cinnamon/sugar. These muffins are best served fresh and warm.



Amy’s Recipe Tip
My favorite way to make these muffins is actually in a mini size, like my mini sourdough muffins. I use a mini muffin pan and make about 30-36 mini muffins out of this batter. The smaller size gives more cinnamon sugar topping to muffin which I love!

How to Store Leftover Sourdough Cinnamon Sugar Muffins
After the muffins have cooled completely, stick them in an airtight container or ziplock bag. These muffins can be kept on the counter in an airtight container for a few days, or for better results, freeze them for up to a couple months.
Frequently Asked Questions
Yes! If you want to long-ferment the batter, mix it up and stick it in the refrigerator for up to 48 hours. This time will activate the discard and ferment the batter giving it more of the benefits from the fermentation process of sourdough. Scoop and bake muffins according to recipe directions.
Yes! Here is the original cinnamon sugar muffin recipe I posted years ago that has both a sourdough and non-sourdough version.
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Cinnamon Sugar Sourdough Muffins
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Equipment
- muffin liners or baking spray
Ingredients
Cinnamon Sugar Sourdough Muffins
- 113 grams unsalted butter, melted and cooled, about 1/2 cup
- 150 grams sourdough discard, about 2/3 cup
- 200 grams granulated sugar, about 1 cup
- 2 large eggs, about 100 grams
- 5 grams vanilla extract, about 1 teaspoon
- 160 grams milk, about 2/3 cup
- 280 grams all purpose flour, about 2 cups, see recipe notes for whole wheat
- 20 grams cornstarch, about 2 Tablespoons
- 10 grams baking powder, about 2 teaspoons
- 7 grams salt, about 1 teaspoon
- 8 grams ground cinnamon, about 1 Tablespoon
- 1 gram nutmeg, about 1/2 teaspoon
Cinnamon Sugar Topping
- 55 grams unsalted butter, melted, reserved in a small bowl, about 4 Tablespoons
- 65 grams granulated sugar, about 1/3 cup
- 8 grams ground cinnamon, about 1 Tablespoon
Instructions
- Preheat your oven to 350ºF and prepare a 12 cup muffin tin with liners or spray with non-stick cooking spray.
- Melt butter in the microwave until just melted. Let cool if needed (butter should be warm room temperature). Add the sourdough discard and whisk to combine. Pour in the sugar and eggs. Whisk again until completely combined. Add the milk and vanilla and whisk until incorporated and smooth.
- To a separate bowl whisk together the dry ingredients. Whisk the flour, cornstarch, baking powder, cinnamon, nutmeg and salt together.
- Pour the wet ingredients into the dry ingredients and mix with a spatula until just mixed – it's okay if your batter has a few small streaks of flour. The key to a tender muffin is not over-mixing.
- Scoop muffin batter into the wells of the muffin tin, filling the tins about 3/4 of the way full. This recipe makes about 12-14 muffins.
- Bake for 20-22 minutes until muffins are baked all the way through. The tops of the muffins should not jiggle and if you insert a toothpick to the middle of the muffin it will come out clean.
- While the muffins cool prepare the topping: Melt butter in a bowl. Mix together sugar and cinnamon in a separate bowl. Dip the top of each muffin into the butter and then dip into the cinnamon sugar mixture. Continue this process until every muffin in coated in cinnamon/sugar. Enjoy warm!
Notes
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.




Delicious! I made the batter the night before and baked them in the morning. It yielded 12 good-sized muffins – I filled the tins right to the top. Thanks for the yummy recipe!
Thanks for the review! I’m glad the muffins turned out great.
Taste is amazing! Can you share with me what to do when you use wheat flour? I canโt find it, I must have skimmed over it. My muffins are a little flat, could that happen from young discard?
I’m glad they tasted great! You can substitute whole wheat (or half whole wheat) in the same quantities as the white flour in this recipe. Flat muffins are most commonly caused by overmixing the batter (you want to stir until just barely mixed) or baking at too low of a temperatureโevery oven bakes a little differently. Hope that helps!
Hi Ma’am,
May I know what is the substitute for eggs please as my family and I don’t eat eggs?
Warmly,
Nithyashree G
India
I haven’t made this recipe without eggs, so I’m not sure what you would substitute. I’m sorry!
No problem!
Thank you!
a friend of mine is highly allergic to eggs. I have made chocolate chip cookies with discard and use 1/4 cup of 2% milk for 1 egg with great success. no one can tell. but i don’t know if it would work for muffins. you could always try.
These turned out great! Very warmly spiced muffins with a delicious topping!
So glad you enjoyed these!
I decided to give this a try with discard and whole wheat flour (as I am also making your soft sourdough sandwich bread). I am a newbie to sourdough and these muffins are delicious! For my young-ish starter/discard, the level of sour was perfect for a sweet muffin! The texture and density were ideal. This will definitely be part of my discard rotation.
I’m so glad you love this recipe! Thanks for sharing ๐
If you make the mini muffin size, how long do you bake them? I canโt wait to make these!
About 12-15 minutes.
These are addictive lol perfect breakfast for rushed school mornings with a bowl of yogurt!
So glad you loved these! Thanks for sharing.
Iโve used fresh milled soft white wheat, and let them ferment overnight. They came out very crumbly, do you know why? Are they supposed to be crumbly? They taste delicious!
Hmm…mine are not usually super crumbly. They are a softer muffin, though. I do notice that with freshly milled soft wheat some of my muffins fall apart easier – they are still very moist, but are very soft. I think that’s part of the nature of soft wheat flour with a lower protein content. You could try mixing a soft and hard wheat next time?
Followed the recipe exactly. Iโve made these 3 times now and each time they have baked up beautifully. Iโve tried regular and mini size. They are a crowd pleaser for sure!
So glad you love this recipe. Thanks for sharing!
I subbed out half flour for whole wheat, abd half butter for Avocado oil to make then a little healthier. They are delicious! Thanks for recipe.
Thanks for sharing your modifications. Glad you enjoyed the recipe!